[Tue Jul 03 00:22:30 CDT 2012] net.sf.picard.sam.ValidateSamFile done. Elapsed time: 12.89 minutes. Next, I use the FixMateInformation to fix the problem, the ...
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samtools quickcheck will now write a warning to stderr if it finds any problems. These messages can be suppressed with a new `-q` option. * samtools markdup ...
18 Jul 2018 ... SAMtools provide efficient utilities on… ... #846 reported by Dianne Velasco) - Fixed compilation problems when using C_INCLUDE_PATH.
17 Jul 2014 ... Hi Yibo, First of all, FYI this is a stack trace: Exception in thread "main" net.sf.samtools.SAMException: Exception when processing alignment for ...
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Best Way to Get Help. SAM tools says the best way to get help with its software is by using its mailing lists. Other Ways Of Getting Help. Here are some other ...
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SAMtools provide efficient utilities on manipulating alignments in the SAM format. ... the benefit of no loss of data and easy integration with any external software.
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on…
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21 Dec 2016 ... Samtools is also able to open a BAM (not SAM) file on a remote FTP or HTTP server if the BAM file name ... http://samtools.sourceforge.net
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6 Dec 2019 ... Samtools is also able to open a BAM (not SAM) file on a remote FTP or ... Each category in the output is broken down into QC pass and QC fail, ...
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